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FLA9 FASCICLIN-like arabinoogalactan 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839384, updated on 15-Oct-2023

Summary

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Gene symbol
FLA9
Gene description
FASCICLIN-like arabinoogalactan 9
Primary source
Araport:AT1G03870
Locus tag
AT1G03870
See related
TAIR:AT1G03870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21M11.20; F21M11_20; FASCICLIN-like arabinoogalactan 9
Summary
fasciclin-like arabinogalactan-protein 9 (Fla9)
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Genomic context

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See FLA9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (982381..983544, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glutaredoxin family protein Neighboring gene prohibitin 2 Neighboring gene cruciferin 2 Neighboring gene RmlC-like cupins superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reduced expression of selected FASCICLIN-LIKE ARABINOGALACTAN PROTEIN genes associates with the abortion of kernels in field crops of Zea mays (maize) and of Arabidopsis seeds. Cagnola JI, et al. Plant Cell Environ, 2018 Mar. PMID 29314044
  2. Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, et al. Mol Cell Proteomics, 2003 Dec. PMID 14517339
  3. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  4. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Drought reduces the expression of FLA9 in Arabidopsis.FLA9 reduces seed abortion in Arabidopsis.
    Title: Reduced expression of selected FASCICLIN-LIKE ARABINOGALACTAN PROTEIN genes associates with the abortion of kernels in field crops of Zea mays (maize) and of Arabidopsis seeds.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100267.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region HDA PubMed 
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
FASCICLIN-like arabinoogalactan 9
NP_563692.1
  • FASCICLIN-like arabinoogalactan 9 (FLA9); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 13 precursor (TAIR:AT5G44130.1); Has 1005 Blast hits to 985 proteins in 182 species: Archae - 18; Bacteria - 304; Metazoa - 15; Fungi - 9; Plants - 624; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    982381..983544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100267.4 → NP_563692.1  FASCICLIN-like arabinoogalactan 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563692.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H794, Q9ZWA8
    UniProtKB/TrEMBL
    A0A178WJQ8, A0A384LCI6, A0A654E6J2, B3LF88
    Conserved Domains (1) summary
    pfam02469
    Location:48 → 183
    Fasciclin; Fasciclin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZWA8.1

Gene LinkOut

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