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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839418, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT1G04770
Locus tag
AT1G04770
See related
Araport:AT1G04770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M7.24; F13M7_24
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (1336274..1337849, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 721 Neighboring gene ncRNA Neighboring gene vesicle-associated membrane protein 726 Neighboring gene uncharacterized protein Neighboring gene Ankyrin repeat family protein Neighboring gene RING/U-box superfamily protein Neighboring gene glycine-rich protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants. Aarabi F, et al. Sci Adv, 2016 Oct. PMID 27730214, Free PMC Article
  2. Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Maruyama-Nakashita A, et al. Plant Cell, 2006 Nov. PMID 17114350, Free PMC Article
  3. Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Maruyama-Nakashita A, et al. Plant J, 2005 May. PMID 15842617
  4. Plastids are major regulators of light signaling in Arabidopsis. Ruckle ME, et al. Plant Physiol, 2012 May. PMID 22383539, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100355.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellular response to sulfur starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of glucosinolate biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_171969.2
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1336274..1337849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100355.4 → NP_171969.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171969.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WU73, Q8L730, Q9MAS6
    UniProtKB/TrEMBL
    A0A178WHH9, A0A5S9SM60, A0A7G2DSU4
    Conserved Domains (2) summary
    sd00006
    Location:159 → 189
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:160 → 192
    TPR_1; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L730.1

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