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MAN1 Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839444, updated on 19-Jun-2024

Summary

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Gene symbol
MAN1
Gene description
Glycosyl hydrolase superfamily protein
Primary source
Araport:AT1G02310
Locus tag
AT1G02310
See related
TAIR:AT1G02310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
endo-beta-mannanase 1; T6A9.1; T6A9_1
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Genomic context

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See MAN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (458133..460831, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cysteine proteinases superfamily protein Neighboring gene Cysteine proteinases superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene integrator complex subunit-like protein Neighboring gene germin-like protein subfamily 2 member 2 precursor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enzymatic characterization of a glycoside hydrolase family 5 subfamily 7 (GH5_7) mannanase from Arabidopsis thaliana. Wang Y, et al. Planta, 2014 Mar. PMID 24327260, Free PMC Article
  2. PNET2 is a component of the plant nuclear lamina and is required for proper genome organization and activity. Tang Y, et al. Dev Cell, 2022 Jan 10. PMID 34822788
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PNET2 is a component of the plant nuclear lamina and is required for proper genome organization and activity.
    Title: PNET2 is a component of the plant nuclear lamina and is required for proper genome organization and activity.
  2. at least five substrate-binding sites required for manno-oligosaccharide hydrolysis; can act as a transglycosylase
    Title: Enzymatic characterization of a glycoside hydrolase family 5 subfamily 7 (GH5_7) mannanase from Arabidopsis thaliana.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_001331331.1
NM_100112.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mannan endo-1,4-beta-mannosidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase superfamily protein
NP_171733.2
  • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    458133..460831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100112.3 → NP_171733.2  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171733.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ29
    UniProtKB/TrEMBL
    A0A5S9S7E8, A0A654E7D2
    Conserved Domains (1) summary
    COG3934
    Location:37 → 327
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]

  2. NM_001331331.1 → NP_001321462.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WL81, A0A1P8AQX8, A0A384KW48, A0A5S9S7E8
    Conserved Domains (1) summary
    COG3934
    Location:57 → 347
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZ29.1

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