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AWPM-19-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839491, updated on 18-Sep-2024

Summary

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Official Full Name
AWPM-19-like family protein
Primary source
TAIR:AT1G04560
Locus tag
AT1G04560
See related
Araport:AT1G04560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1G11.19; T1G11_19
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1244947..1246059)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AUX/IAA transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene Major facilitator superfamily protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100335.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AWPM-19-like family protein
NP_563710.1
  • AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1244947..1246059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100335.4 → NP_563710.1  AWPM-19-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563710.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WQ99, O23029
    Conserved Domains (1) summary
    pfam05512
    Location:15 → 143
    AWPM-19; AWPM-19-like family
Nucleotide Protein
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