U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT1G02190 Fatty acid hydroxylase superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839541, updated on 15-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
AT1G02190
Gene description
Fatty acid hydroxylase superfamily
Primary source
Araport:AT1G02190
Locus tag
AT1G02190
See related
TAIR:AT1G02190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6A9.15
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT1G02190 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (415074..418027)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cox19 family protein (CHCH motif) Neighboring gene metacaspase 1 Neighboring gene ferredoxin-like protein Neighboring gene Fatty acid hydroxylase superfamily Neighboring gene miscRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis CER1-LIKE1 Functions in a Cuticular Very-Long-Chain Alkane-Forming Complex. Pascal S, et al. Plant Physiol, 2019 Feb. PMID 30514726, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_100099.4
NM_202013.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Fatty acid hydroxylase superfamily
NP_171721.3
  • Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 2538 Blast hits to 2531 proteins in 532 species: Archae - 0; Bacteria - 866; Metazoa - 257; Fungi - 377; Plants - 504; Viruses - 3; Other Eukaryotes - 531 (source: NCBI BLink).
NP_973742.1
  • Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    415074..418027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100099.4 → NP_171721.3  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171721.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HVX7, F4HVX8, O23678
    UniProtKB/TrEMBL
    A0A5S9S5Z5, Q39047
    Conserved Domains (1) summary
    PLN02869
    Location:1 → 622
    PLN02869; fatty aldehyde decarbonylase

  2. NM_202013.1 → NP_973742.1  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973742.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W820, Q39047
    Conserved Domains (1) summary
    PLN02869
    Location:1 → 618
    PLN02869; fatty aldehyde decarbonylase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HVX7.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools