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transmembrane receptors / ATP binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839606, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane receptors / ATP binding protein
Primary source
TAIR:AT1G27170
Locus tag
AT1G27170
See related
Araport:AT1G27170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7N9.23; T7N9_23
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (9433393..9439417)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene valyl-tRNA synthetase / valine-tRNA ligase-like protein Neighboring gene disease resistance protein (TIR-NBS-LRR class) Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001160900.2
NM_102479.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
transmembrane receptors / ATP binding protein
NP_001154372.1
  • transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink).
NP_174037.3
  • transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9433393..9439417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160900.2 → NP_001154372.1  transmembrane receptors / ATP binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154372.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGD7, A0A5S9W3S8, F4HR52
    Conserved Domains (7) summary
    cd00116
    Location:1079 → 1181
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:931 → 953
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:1155 → 1174
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:206 → 464
    NB-ARC; NB-ARC domain
    pfam01582
    Location:17 → 181
    TIR; TIR domain
    pfam12799
    Location:788 → 828
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13191
    Location:189 → 307
    AAA_16; AAA ATPase domain

  2. NM_102479.5 → NP_174037.3  transmembrane receptors / ATP binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174037.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGD7, A0A5S9W3S8, F4HR53
    Conserved Domains (7) summary
    cd00116
    Location:1079 → 1181
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:931 → 953
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:1155 → 1174
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:206 → 464
    NB-ARC; NB-ARC domain
    pfam01582
    Location:14 → 181
    TIR; TIR domain
    pfam12799
    Location:788 → 828
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13191
    Location:189 → 307
    AAA_16; AAA ATPase domain
Nucleotide Protein
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