U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hypothetical protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839881, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
hypothetical protein (Protein of unknown function, DUF538)
Primary source
TAIR:AT1G30020
Locus tag
AT1G30020
See related
Araport:AT1G30020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1P2.11; T1P2_11
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (10515874..10516347, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene prefoldin 6 Neighboring gene alpha-mannosidase 3 Neighboring gene Intron maturase, type II family protein Neighboring gene pseudo Neighboring gene gibberellin 2-oxidase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Involvement of ABA Responsive SVB Genes in the Regulation of Trichome Formation in Arabidopsis. Hussain S, et al. Int J Mol Sci, 2021 Jun 24. PMID 34202673, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_102742.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hypothetical protein (Protein of unknown function, DUF538)
NP_174295.1
  • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G46230.1); Has 339 Blast hits to 339 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10515874..10516347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102742.1 → NP_174295.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174295.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9C8R7
    Conserved Domains (1) summary
    pfam04398
    Location:29 → 114
    DUF538; Protein of unknown function, DUF538
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools