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Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839887, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase superfamily protein
Primary source
TAIR:AT1G30080
Locus tag
AT1G30080
See related
Araport:AT1G30080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1P2.13; T1P2_13
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (10550855..10553295, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene COP1-interacting protein-like protein Neighboring gene SGS domain-containing protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene nine-cis-epoxycarotenoid dioxygenase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332880.1
NM_102747.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase superfamily protein
NP_174300.2
  • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G18340.1); Has 2128 Blast hits to 2112 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 18; Plants - 2098; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10550855..10553295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102747.3 → NP_174300.2  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174300.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DY61, F4I4R0, Q8L7E6
    Conserved Domains (1) summary
    cl23725
    Location:36 → 352
    Glyco_hydro_1; Glycosyl hydrolase family 1

  2. NM_001332880.1 → NP_001320671.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W7D9, A0A1P8ANI0, A0A654EFB7
Nucleotide Protein
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