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Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839888, updated on 18-Sep-2024

Summary

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Official Full Name
Galactose oxidase/kelch repeat superfamily protein
Primary source
TAIR:AT1G30090
Locus tag
AT1G30090
See related
Araport:AT1G30090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2H7.11; T2H7_11
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (10559496..10561545, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SGS domain-containing protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene nine-cis-epoxycarotenoid dioxygenase 5 Neighboring gene pyruvate dehydrogenase E1 beta Neighboring gene nudix hydrolase homolog 25

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102748.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Galactose oxidase/kelch repeat superfamily protein
NP_564347.1
  • Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G24540.1); Has 6648 Blast hits to 4175 proteins in 221 species: Archae - 14; Bacteria - 391; Metazoa - 4969; Fungi - 0; Plants - 1047; Viruses - 9; Other Eukaryotes - 218 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10559496..10561545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102748.2 → NP_564347.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564347.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C6Z0, Q9C8R2
    UniProtKB/TrEMBL
    A0A178WM79
    Conserved Domains (4) summary
    smart00612
    Location:161 → 207
    Kelch; Kelch domain
    sd00038
    Location:147 → 193
    Kelch; KELCH repeat [structural motif]
    pfam00646
    Location:52 → 95
    F-box; F-box domain
    pfam01344
    Location:196 → 241
    Kelch_1; Kelch motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6Z0.1

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