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SEU SEUSS transcriptional co-regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840981, updated on 18-Sep-2024

Summary

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Official Symbol
SEU
Official Full Name
SEUSS transcriptional co-regulator
Primary source
TAIR:AT1G43850
Locus tag
AT1G43850
See related
Araport:AT1G43850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28H19.10; F28H19_10; seuss
Summary
Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.
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Genomic context

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See SEU in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (16616988..16622049)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Condensation of SEUSS promotes hyperosmotic stress tolerance in Arabidopsis. Wang B, et al. Nat Chem Biol, 2022 Dec. PMID 36376475
  2. SEUSS integrates transcriptional and epigenetic control of root stem cell organizer specification. Zhai H, et al. EMBO J, 2020 Oct 15. PMID 32926464, Free PMC Article
  3. The role of SEUSS in auxin response and floral organ patterning. Pfluger J, et al. Development, 2004 Oct. PMID 15358669
  4. LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers. Grigorova B, et al. Development, 2011 Jun. PMID 21610026, Free PMC Article
  5. SEUSS and AINTEGUMENTA mediate patterning and ovule initiation during gynoecium medial domain development. Azhakanandam S, et al. Plant Physiol, 2008 Mar. PMID 18184731, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SIZ1-Mediated SUMO Modification of SEUSS Regulates Photomorphogenesis in Arabidopsis.
    Title: SIZ1-Mediated SUMO Modification of SEUSS Regulates Photomorphogenesis in Arabidopsis.
  2. SEUSS integrates transcriptional and epigenetic control of root stem cell organizer specification.
    Title: SEUSS integrates transcriptional and epigenetic control of root stem cell organizer specification.
  3. Mutations in SEU affect H3K4me3 methylation at IAA6 and IAA19, and SEU positively regulates warm temperature-mediated hypocotyl growth together with PIF4. Collectively, the results reveal that SEU acts as a central regulator integrating light and temperature signals to control plant growth by coordinating with PIF4.
    Title: SEUSS and PIF4 Coordinately Regulate Light and Temperature Signaling Pathways to Control Plant Growth.
  4. Data indicate that SEUSS (SEU) gene has distinct genetic interactions with SHORT-ROOT (SHR), SCARECROW (SCR), and SCARECROW-LIKE3 (SCL3) genes.
    Title: SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
  5. SEU and SLK2 function redundantly to promote embryonic shoot development and likely act through a non-cell autonomous pathway to promote KNOXI activity.
    Title: SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
  6. SEUSS (SEU) and AINTEGUMENTA (ANT) encode transcriptional regulators that are critical for the proper formation of ovules from the carpel margin meristem (CMM).
    Title: Transcriptomic characterization of a synergistic genetic interaction during carpel margin meristem development in Arabidopsis thaliana.
  7. LEUNIG (LUG) and SEUSS (SEU) co-repressors repress miR172 expression in the outer whorls of Arabidopsis thaliana flowers.
    Title: LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers.
  8. The seu cyp85A2 double mutants displayed enhanced disruptions of gynoecial and ovule development.
    Title: Synergistic disruptions in seuss cyp85A2 double mutants reveal a role for brassinolide synthesis during gynoecium and ovule development.
  9. SEU and SLK1 are required for optimal auxin signaling during root and gynoecial development.
    Title: SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis.
  10. SEU and ANT are part of a complex and robust molecular system that coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium.
    Title: SEUSS and AINTEGUMENTA mediate patterning and ovule initiation during gynoecium medial domain development.
Submit: New GeneRIF Correction See all GeneRIFs (12)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001123962.2
NM_103511.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription coregulator activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular response to external biotic stimulus IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in cellular response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within gynoecium development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within multicellular organism development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plant ovule development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of flower development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to cycloheximide IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to hypoxia IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to nematode IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to oxidative stress IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to silver ion IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SEUSS transcriptional co-regulator
NP_001117434.1
  • seuss (SEU); FUNCTIONS IN: protein binding, transcription cofactor activity, DNA binding, protein heterodimerization activity; INVOLVED IN: multicellular organismal development, gynoecium development, embryo development, ovule development, regulation of flower development; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_175051.1
  • seuss (SEU); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 74651 Blast hits to 25837 proteins in 1166 species: Archae - 31; Bacteria - 2985; Metazoa - 26009; Fungi - 8425; Plants - 3606; Viruses - 613; Other Eukaryotes - 32982 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16616988..16622049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103511.4 → NP_175051.1  SEUSS transcriptional co-regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175051.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXE8, Q8W234, Q9MAR3
    UniProtKB/TrEMBL
    A0A7G2E1W2
    Conserved Domains (1) summary
    pfam01803
    Location:309 → 563
    LIM_bind; LIM-domain binding protein

  2. NM_001123962.2 → NP_001117434.1  SEUSS transcriptional co-regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117434.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXE8, Q8W234, Q9MAR3
    UniProtKB/TrEMBL
    A0A7G2E1W2
    Conserved Domains (1) summary
    pfam01803
    Location:309 → 563
    LIM_bind; LIM-domain binding protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W234.1

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