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CELLULOSE SYNTHASE INTERACTIVE 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841015, updated on 18-Sep-2024

Summary

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Official Full Name
CELLULOSE SYNTHASE INTERACTIVE 2
Primary source
TAIR:AT1G44120
Locus tag
AT1G44120
See related
Araport:AT1G44120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CELLULOSE SYNTHASE INTERACTIVE 2; CSI2; T7O23.25; T7O23_25
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (16780059..16787623)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene amino acid permease 5 Neighboring gene ncRNA Neighboring gene Cyclin A1;1 Neighboring gene ncRNA Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene pseudo Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103538.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anisotropic cell growth IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cellulose synthase complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CELLULOSE SYNTHASE INTERACTIVE 2
NP_175078.1
  • Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G77460.2); Has 2932 Blast hits to 1598 proteins in 201 species: Archae - 2; Bacteria - 13; Metazoa - 467; Fungi - 147; Plants - 2069; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16780059..16787623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333226.1 → NP_001321524.1  CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6U6, A0A1P8ARA5

  2. NM_001333227.1 → NP_001321523.1  CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6U6, A0A1P8AR52

  3. NM_103538.1 → NP_175078.1  CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175078.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C6Y4
    UniProtKB/TrEMBL
    A0A178W6U4
    Conserved Domains (4) summary
    PLN03200
    Location:1 → 2112
    PLN03200; cellulose synthase-interactive protein; Provisional
    cd00020
    Location:441 → 556
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam00168
    Location:1993 → 2089
    C2; C2 domain
    sd00043
    Location:449 → 474
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6Y4.1

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