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Lhca5 photosystem I light harvesting complex protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841099, updated on 18-Sep-2024

Summary

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Official Symbol
Lhca5
Official Full Name
photosystem I light harvesting complex protein 5
Primary source
TAIR:AT1G45474
Locus tag
AT1G45474
See related
Araport:AT1G45474
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G19.4; F2G19_4; photosystem I light harvesting complex gene 5
Summary
Encodes a component of the light harvesting complex of photosystem I.
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Genomic context

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See Lhca5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (17179250..17180806)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Translation elongation factor EFG/EF2 protein Neighboring gene uncharacterized protein Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene receptor like protein 6 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. rarely expressed Lhca5 light-harvesting protein interacts with Light Harvesting Complex I in the Lhca2/Lhca3-site.
    Title: Lhca5 interaction with plant photosystem I.
  2. Lhca5 is indeed a protein belonging to the light-harvesting antenna of photosystem I
    Title: Pigment binding, fluorescence properties, and oligomerization behavior of Lhca5, a novel light-harvesting protein.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_103597.5
NM_179447.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pigment binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within photosynthesis, light harvesting in photosystem I IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to high light intensity IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to low light intensity stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane HDA PubMed 
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
part_of photosystem I antenna complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
photosystem I light harvesting complex protein 5
NP_175137.1
  • photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
NP_849778.1
  • photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17179250..17180806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179447.2 → NP_849778.1  photosystem I light harvesting complex protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849778.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFW4, Q8L9Y7, Q9C639, Q9XF85
    UniProtKB/TrEMBL
    A0A178WNQ0, A0A5S9WK69, A0A7G2DYT7
    Conserved Domains (1) summary
    PLN00147
    Location:2 → 254
    PLN00147; light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

  2. NM_103597.5 → NP_175137.1  photosystem I light harvesting complex protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175137.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFW4, Q8L9Y7, Q9C639, Q9XF85
    UniProtKB/TrEMBL
    A0A178WNQ0, A0A5S9WK69, A0A7G2DYT7
    Conserved Domains (1) summary
    PLN00147
    Location:2 → 254
    PLN00147; light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C639.1

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