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DPP6 N-terminal domain-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841325, updated on 18-Sep-2024

Summary

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Official Full Name
DPP6 N-terminal domain-like protein
Primary source
TAIR:AT1G49015
Locus tag
AT1G49015
See related
Araport:AT1G49015
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (18134528..18135312)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 11 Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene tRNA-Asp Neighboring gene PLAC8 family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 3 complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DPP6 N-terminal domain-like protein
NP_564538.1
  • DPP6 N-terminal domain-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 427 Blast hits to 427 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 167; Plants - 63; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18134528..18135312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103795.1 → NP_564538.1  DPP6 N-terminal domain-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564538.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I057, Q9M9A4
    Conserved Domains (1) summary
    COG5354
    Location:13 → 218
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Nucleotide Protein
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