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D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841433, updated on 18-Sep-2024

Summary

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Official Full Name
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Primary source
TAIR:AT1G50110
Locus tag
AT1G50110
See related
Araport:AT1G50110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2J10.4; F2J10_4
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (18557984..18560391, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Neighboring gene tRNA-Leu Neighboring gene immunoglobulin Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The cytosolic branched-chain aminotransferases of Arabidopsis thaliana influence methionine supply, salvage and glucosinolate metabolism. Lächler K, et al. Plant Mol Biol, 2015 May. PMID 25851613
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001333419.1
NM_103897.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables L-isoleucine-2-oxoglutarate transaminase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables L-isoleucine-2-oxoglutarate transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables L-leucine-2-oxoglutarate transaminase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables L-leucine-2-oxoglutarate transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables L-valine-2-oxoglutarate transaminase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables L-valine-2-oxoglutarate transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables methionine-oxo-acid transaminase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-methionine salvage IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in L-valine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glucosinolate biosynthetic process from homomethionine IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in isoleucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NP_175431.1
  • D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT1G50090.1); Has 12195 Blast hits to 12195 proteins in 2532 species: Archae - 155; Bacteria - 7654; Metazoa - 266; Fungi - 412; Plants - 250; Viruses - 0; Other Eukaryotes - 3458 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18557984..18560391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103897.4 → NP_175431.1  D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175431.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q42148, Q8L961, Q9LPM9
    UniProtKB/TrEMBL
    A0A178WB05, A0A5S9WNE0, Q0WUX7
    Conserved Domains (1) summary
    PLN03117
    Location:1 → 356
    PLN03117; Branched-chain-amino-acid aminotransferase; Provisional

  2. NM_001333419.1 → NP_001320462.1  D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AMV4, A0A5S9WNE0, Q0WUX7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPM9.1

Gene LinkOut

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