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NTMC2T5.1 N-terminal-transmembrane-C2 domain type 5.1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841448, updated on 18-Sep-2024

Summary

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Official Symbol
NTMC2T5.1
Official Full Name
N-terminal-transmembrane-C2 domain type 5.1
Primary source
TAIR:AT1G50260
Locus tag
AT1G50260
See related
Araport:AT1G50260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14I3.13; F14I3_13; N-terminal-transmembrane-C2 domain type 5.1; NTMC2TYPE5.1
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Genomic context

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See NTMC2T5.1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (18617593..18621957, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B3 domain protein Neighboring gene kinase family with ARM repeat domain-containing protein Neighboring gene FTSH protease 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The N-coil and the globular N-terminal domain of plant ARGONAUTE1 are interaction hubs for regulatory factors. Bressendorff S, et al. Biochem J, 2023 Jul 12. PMID 37278687
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001198258.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
N-terminal-transmembrane-C2 domain type 5.1
NP_001185187.1
  • N-terminal-transmembrane-C2 domain type 5.1 (NTMC2T5.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G19830.2).
NP_175444.2
  • N-terminal-transmembrane-C2 domain type 5.1 (NTMC2T5.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G19830.2); Has 1179 Blast hits to 1055 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 322; Fungi - 255; Plants - 537; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18617593..18621957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103910.4 → NP_175444.2  N-terminal-transmembrane-C2 domain type 5.1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175444.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WKK3, A0A654EIP2, Q8L626
    Conserved Domains (1) summary
    pfam00168
    Location:401 → 480
    C2; C2 domain

  2. NM_001198258.1 → NP_001185187.1  N-terminal-transmembrane-C2 domain type 5.1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185187.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WKK3, A0A654EIP2, F4I4Z6
    Conserved Domains (1) summary
    pfam00168
    Location:360 → 439
    C2; C2 domain
Nucleotide Protein
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