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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841449, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G50270
Locus tag
AT1G50270
See related
Araport:AT1G50270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14I3.12; F14I3_12
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (18622017..18624250)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene kinase family with ARM repeat domain-containing protein Neighboring gene FTSH protease 1 Neighboring gene N-terminal-transmembrane-C2 domain type 5.1 Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene uncharacterized protein Neighboring gene TBP-associated factor 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103911.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_175445.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 37475 Blast hits to 13706 proteins in 234 species: Archae - 0; Bacteria - 8; Metazoa - 62; Fungi - 67; Plants - 36828; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18622017..18624250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103911.2 → NP_175445.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175445.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WP29, Q9SX45
    UniProtKB/TrEMBL
    A0A5S9WNN5, A0A654EH59
    Conserved Domains (5) summary
    TIGR00756
    Location:272 → 306
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00006
    Location:475 → 504
    TPR; TPR repeat [structural motif]
    sd00004
    Location:374 → 401
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:170 → 200
    PPR; PPR repeat
    pfam13041
    Location:270 → 318
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SX45.1

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