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Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841600, updated on 18-Sep-2024

Summary

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Official Full Name
Tudor/PWWP/MBT superfamily protein
Primary source
TAIR:AT1G51745
Locus tag
AT1G51745
See related
Araport:AT1G51745
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (19191466..19194908)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Amino acid dehydrogenase family protein Neighboring gene Ubiquitin-conjugating enzyme family protein Neighboring gene syntaxin of plants 81 Neighboring gene pseudo Neighboring gene peptidase M20/M25/M40 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PWWP-DOMAIN INTERACTOR OF POLYCOMBS1 Interacts with Polycomb-Group Proteins and Histones and Regulates Arabidopsis Flowering and Development. Hohenstatt ML, et al. Plant Cell, 2018 Jan. PMID 29330200, Free PMC Article
  2. The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. Tan LM, et al. EMBO J, 2018 Oct 1. PMID 30104406, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PWO1 (and possibly also PWO2 and PWO3) may interact with PcG proteins to recruit them to subnuclear speckles and to mediate full H3/nucleosomal compaction. [PWO2]
    Title: PWWP-DOMAIN INTERACTOR OF POLYCOMBS1 Interacts with Polycomb-Group Proteins and Histones and Regulates Arabidopsis Flowering and Development.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001036095.4
NM_001333500.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of protein-containing complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
Tudor/PWWP/MBT superfamily protein
NP_001031172.1
  • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001319198.1
  • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 543 Blast hits to 394 proteins in 123 species: Archae - 0; Bacteria - 201; Metazoa - 137; Fungi - 38; Plants - 92; Viruses - 3; Other Eukaryotes - 72 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19191466..19194908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333500.1 → NP_001319198.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I9N2, P59278
    UniProtKB/TrEMBL
    A0A178W3C7, A0A5S9WQW9
    Conserved Domains (1) summary
    pfam00855
    Location:14 → 114
    PWWP; PWWP domain

  2. NM_001036095.4 → NP_001031172.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031172.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I9N2, P59278
    UniProtKB/TrEMBL
    F4I9N3
Nucleotide Protein
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