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DNA directed RNA polymerase, 7 kDa subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841806, updated on 18-Sep-2024

Summary

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Official Full Name
DNA directed RNA polymerase, 7 kDa subunit
Primary source
TAIR:AT1G53690
Locus tag
AT1G53690
See related
Araport:AT1G53690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22G10.4; F22G10_4
Summary
Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (20042452..20043626, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene WAG 1 Neighboring gene putative aminoacyl-tRNA ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. Qin Y, et al. PLoS Genet, 2009 Aug. PMID 19714218, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333605.1
NM_001333606.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pollen tube growth IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA directed RNA polymerase, 7 kDa subunit
NP_001319215.1
  • DNA directed RNA polymerase, 7 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: pollen tube growth, transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sperm cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA polymerase Rbp10 (InterPro:IPR006591); BEST Arabidopsis thaliana protein match is: DNA directed RNA polymerase, 7 kDa subunit (TAIR:AT5G41010.1); Has 279 Blast hits to 279 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 54; Plants - 68; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20042452..20043626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333605.1 → NP_001319215.1  DNA directed RNA polymerase, 7 kDa subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C8M4
    UniProtKB/TrEMBL
    A0A178W9H9, A0A1P8AV79, A0A384LER3
    Conserved Domains (1) summary
    smart00659
    Location:17 → 59
    RPOLCX; RNA polymerase subunit CX

  2. NM_001333606.1 → NP_001322822.1  DNA directed RNA polymerase, 7 kDa subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C8M4
    UniProtKB/TrEMBL
    A0A178W9H9, A0A1P8AV79, A0A384LER3
    Conserved Domains (1) summary
    smart00659
    Location:17 → 59
    RPOLCX; RNA polymerase subunit CX
Nucleotide Protein
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