U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZKT protein containing PDZ domain, a K-box domain, and a TPR region [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841995, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ZKT
Official Full Name
protein containing PDZ domain, a K-box domain, and a TPR region
Primary source
TAIR:AT1G55480
Locus tag
AT1G55480
See related
Araport:AT1G55480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
a K-box domain; and a TPR region; protein containing PDZ domain; T5A14.12; T5A14_12
Summary
Encodes a member of a novel plant protein family containing a PDZ, a K-box, and a TPR motif. mRNA but not protein levels decrease after wounding. ZKT is phosphorylated at Thr and Ser residues after wounding.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ZKT in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (20713499..20715611)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DNA/RNA-binding protein Kin17, conserved region Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene chaperonin 60 beta Neighboring gene evolutionarily conserved C-terminal region 4 Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene TATA binding protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular characterization of the ZKT gene encoding a protein with PDZ, K-Box, and TPR motifs in Arabidopsis. Ishikawa A, et al. Biosci Biotechnol Biochem, 2005 May. PMID 15914918
  2. MET1 is a thylakoid-associated TPR protein involved in photosystem II supercomplex formation and repair in Arabidopsis. Bhuiyan NH, et al. Plant Cell, 2015 Jan. PMID 25587003, Free PMC Article
  3. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
  4. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
  5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The expression and characterization of ZKT from A. thaliana is reported. [ZKT]
    Title: Molecular characterization of the ZKT gene encoding a protein with PDZ, K-Box, and TPR motifs in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_104423.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photosynthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in photosystem II assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in photosystem II repair IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to high light intensity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to light stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast stroma HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in chromoplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in stromal side of plastid thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in thylakoid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein containing PDZ domain, a K-box domain, and a TPR region
NP_564691.1
  • protein containing PDZ domain, a K-box domain, and a TPR region (ZKT); FUNCTIONS IN: binding; INVOLVED IN: response to wounding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), PDZ/DHR/GLGF (InterPro:IPR001478), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: rubredoxin family protein (TAIR:AT5G17170.2); Has 316 Blast hits to 316 proteins in 83 species: Archae - 2; Bacteria - 103; Metazoa - 8; Fungi - 2; Plants - 160; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20713499..20715611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104423.4 → NP_564691.1  protein containing PDZ domain, a K-box domain, and a TPR region [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564691.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L972, Q94BS2, Q9ZVU6
    UniProtKB/TrEMBL
    A0A178WGD0, A0A5S9WM55, A0A7G2E1A8
    Conserved Domains (3) summary
    PLN03098
    Location:224 → 309
    LPA1; LOW PSII ACCUMULATION1; Provisional
    sd00006
    Location:221 → 245
    TPR; TPR repeat [structural motif]
    cl00117
    Location:94 → 134
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94BS2.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools