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BCDH BETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841998, updated on 18-Sep-2024

Summary

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Official Symbol
BCDH BETA1
Official Full Name
branched-chain alpha-keto acid decarboxylase E1 beta subunit
Primary source
TAIR:AT1G55510
Locus tag
AT1G55510
See related
Araport:AT1G55510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
branched-chain alpha-keto acid decarboxylase E1 beta subunit; BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT; T5A14.9; T5A14_9
Summary
branched-chain alpha-keto acid decarboxylase E1 beta
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Genomic context

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See BCDH BETA1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (20723279..20725747)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein containing PDZ domain, a K-box domain, and a TPR region Neighboring gene chaperonin 60 beta Neighboring gene evolutionarily conserved C-terminal region 4 Neighboring gene TATA binding protein 2 Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_104426.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within branched-chain amino acid catabolic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
branched-chain alpha-keto acid decarboxylase E1 beta subunit
NP_175947.1
  • branched-chain alpha-keto acid decarboxylase E1 beta subunit (BCDH BETA1); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Transketolase family protein (TAIR:AT3G13450.1); Has 16577 Blast hits to 16568 proteins in 2706 species: Archae - 211; Bacteria - 10745; Metazoa - 523; Fungi - 224; Plants - 389; Viruses - 0; Other Eukaryotes - 4485 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20723279..20725747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104426.4 → NP_175947.1  branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175947.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82450, Q9SAV3
    UniProtKB/TrEMBL
    A0A178W102
    Conserved Domains (3) summary
    cd07036
    Location:37 → 202
    TPP_PYR_E1-PDHc-beta_like; Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins
    PTZ00182
    Location:1 → 350
    PTZ00182; 3-methyl-2-oxobutanate dehydrogenase; Provisional
    pfam02780
    Location:223 → 342
    Transketolase_C; Transketolase, C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAV3.1

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