U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TBP2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841999, updated on 22-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TBP2
Primary source
TAIR:AT1G55520
Locus tag
AT1G55520
See related
Araport:AT1G55520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA TATA BINDING PROTEIN 2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2
Summary
TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (20725470..20728093, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein containing PDZ domain, a K-box domain, and a TPR region Neighboring gene chaperonin 60 beta Neighboring gene evolutionarily conserved C-terminal region 4 Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Role of the TATA binding protein-transcription factor IIB interaction in supporting basal and activated transcription in plant cells. Pan S, et al. Plant Cell, 2000 Jan. PMID 10634912, Free PMC Article
  2. Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Reiland S, et al. Plant Physiol, 2009 Jun. PMID 19376835, Free PMC Article
  3. Plant class B HSFs inhibit transcription and exhibit affinity for TFIIB and TBP. Czarnecka-Verner E, et al. Plant Mol Biol, 2004 Sep. PMID 15604728
  4. Characterization of two Arabidopsis thaliana myb-like proteins showing affinity to telomeric DNA sequence. Schrumpfová P, et al. Genome, 2004 Apr. PMID 15060584
  5. Interaction between the Arabidopsis thaliana heat shock transcription factor HSF1 and the TATA binding protein TBP. Reindl A, et al. FEBS Lett, 1998 Oct 9. PMID 9801140

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001333716.1
NM_001333717.1
NM_104427.4
NM_179481.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables TBP-class protein binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription initiation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus TAS
Traceable Author Statement
more info
  

General protein information

Go to the top of the page Help
Preferred Names
TATA binding protein 2
NP_175948.1
  • TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
NP_849812.1
  • TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20725470..20728093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104427.4 → NP_175948.1  TATA binding protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175948.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P28148, Q53YT7
    UniProtKB/TrEMBL
    A0A178WDQ6, A0A5S9WPW7
    Conserved Domains (1) summary
    PLN00062
    Location:22 → 200
    PLN00062; TATA-box-binding protein; Provisional

  2. NM_001333716.1 → NP_001321102.1  TATA binding protein 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8APV5

  3. NM_001333717.1 → NP_001321103.1  TATA binding protein 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P28148, Q53YT7
    UniProtKB/TrEMBL
    A0A178WDQ6, A0A5S9WPW7
    Conserved Domains (1) summary
    PLN00062
    Location:22 → 200
    PLN00062; TATA-box-binding protein; Provisional

  4. NM_179481.2 → NP_849812.1  TATA binding protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849812.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P28148, Q53YT7
    UniProtKB/TrEMBL
    A0A178WDQ6, A0A5S9WPW7
    Conserved Domains (1) summary
    PLN00062
    Location:22 → 200
    PLN00062; TATA-box-binding protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P28148.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools