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lysine-specific demethylase, putative (DUF1296) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842032, updated on 18-Sep-2024

Summary

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Official Full Name
lysine-specific demethylase, putative (DUF1296)
Primary source
TAIR:AT1G55820
Locus tag
AT1G55820
See related
Araport:AT1G55820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20N2.19
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (20864339..20867761)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ferredoxin-fold anticodon-binding domain protein Neighboring gene BolA-like family protein Neighboring gene uridine kinase-like 3 Neighboring gene coiled-coil protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene cellulose synthase like E1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis. Lee HW, et al. J Plant Physiol, 2014 Mar 1. PMID 24484953
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_104459.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
lysine-specific demethylase, putative (DUF1296)
NP_175978.2
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: GBF-interacting protein 1 (TAIR:AT3G13222.1); Has 1074 Blast hits to 540 proteins in 140 species: Archae - 0; Bacteria - 57; Metazoa - 222; Fungi - 108; Plants - 188; Viruses - 12; Other Eukaryotes - 487 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20864339..20867761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104459.4 → NP_175978.2  lysine-specific demethylase, putative (DUF1296) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175978.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4FVR1, Q9LFZ2, Q9LG31
    UniProtKB/TrEMBL
    A0A178W7R3, A0A5S9WM93
    Conserved Domains (1) summary
    pfam06972
    Location:13 → 73
    DUF1296; Protein of unknown function (DUF1296)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4FVR1.1

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