U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATRPAC42 DNA-directed RNA polymerase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842377, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ATRPAC42
Official Full Name
DNA-directed RNA polymerase family protein
Primary source
TAIR:AT1G60850
Locus tag
AT1G60850
See related
Araport:AT1G60850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AAC42; F23C21.3; F23C21_3; RNA POLYMERASE I SUBUNIT 42
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATRPAC42 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (22397913..22400413, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene tRNA-Gly Neighboring gene ARF-GAP domain 2 Neighboring gene maternal effect embryo arrest 9

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis. Le MH, et al. PLoS One, 2014. PMID 25036661, Free PMC Article
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001333919.1
NM_104766.5
NM_179502.4
NM_202328.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA polymerase I activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase III activity IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DNA-directed RNA polymerase family protein
NP_176282.1
  • ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1331 Blast hits to 1329 proteins in 354 species: Archae - 245; Bacteria - 1; Metazoa - 283; Fungi - 347; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
NP_849833.1
  • ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1346 Blast hits to 1344 proteins in 356 species: Archae - 246; Bacteria - 1; Metazoa - 283; Fungi - 361; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
NP_974057.1
  • ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22397913..22400413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179502.4 → NP_849833.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849833.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBU3, A0A384LJA0, Q39215, Q9C6C2
    Conserved Domains (1) summary
    cd07032
    Location:74 → 375
    RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III

  2. NM_104766.5 → NP_176282.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176282.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBU3, A0A384LJA0, Q39215, Q9C6C2
    Conserved Domains (1) summary
    cd07032
    Location:74 → 375
    RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III

  3. NM_001333919.1 → NP_001320360.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBU3, A0A384LJA0, Q39215, Q9C6C2
    Conserved Domains (1) summary
    cd07032
    Location:74 → 375
    RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III

  4. NM_202328.3 → NP_974057.1  DNA-directed RNA polymerase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974057.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HRL9
    Conserved Domains (2) summary
    cd07032
    Location:74 → 274
    RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III
    smart00662
    Location:86 → 275
    RPOLD; RNA polymerases D
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools