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VIP5 plus-3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842395, updated on 18-Sep-2024

Summary

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Official Symbol
VIP5
Official Full Name
plus-3 domain-containing protein
Primary source
TAIR:AT1G61040
Locus tag
AT1G61040
See related
Araport:AT1G61040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7P1.17; T7P1_17; vernalization independence 5
Summary
Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.
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Genomic context

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See VIP5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (22483104..22485969)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene WAPL (Wings apart-like protein regulation of heterochromatin) protein Neighboring gene alpha 1,4-glycosyltransferase family protein Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana. Lu C, et al. Plant Cell, 2017 Feb. PMID 28188267, Free PMC Article
  2. A mechanism related to the yeast transcriptional regulator Paf1c is required for expression of the Arabidopsis FLC/MAF MADS box gene family. Oh S, et al. Plant Cell, 2004 Nov. PMID 15472079, Free PMC Article
  3. PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin. Park S, et al. Plant Physiol, 2010 Jun. PMID 20363855, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The phosphorylation of SPT5 by CDKD;2 enables it to recruit VIP5 to regulate chromatin and transcription in Arabidopsis.
    Title: Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_104784.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plus-3 domain-containing protein
NP_176299.1
  • vernalization independence 5 (VIP5); FUNCTIONS IN: DNA binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343); Has 7244 Blast hits to 3723 proteins in 490 species: Archae - 2; Bacteria - 3364; Metazoa - 2087; Fungi - 627; Plants - 250; Viruses - 32; Other Eukaryotes - 882 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22483104..22485969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333926.1 → NP_001322667.1  plus-3 domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWR3, Q9C950
    UniProtKB/TrEMBL
    A0A178WDP6, A0A5S9WR26
    Conserved Domains (2) summary
    smart00719
    Location:261 → 372
    Plus3; Short conserved domain in transcriptional regulators
    COG5296
    Location:70 → 516
    COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]

  2. NM_001333927.1 → NP_001322666.1  plus-3 domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWR3, Q9C950
    UniProtKB/TrEMBL
    A0A178WDP6, A0A5S9WR26
    Conserved Domains (2) summary
    smart00719
    Location:261 → 372
    Plus3; Short conserved domain in transcriptional regulators
    COG5296
    Location:70 → 516
    COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]

  3. NM_104784.4 → NP_176299.1  plus-3 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176299.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWR3, Q9C950
    UniProtKB/TrEMBL
    A0A178WDP6, A0A5S9WR26
    Conserved Domains (2) summary
    smart00719
    Location:261 → 372
    Plus3; Short conserved domain in transcriptional regulators
    COG5296
    Location:70 → 516
    COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C950.1

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