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Uncharacterized protein family (UPF0016) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842719, updated on 18-Sep-2024

Summary

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Official Full Name
Uncharacterized protein family (UPF0016)
Primary source
TAIR:AT1G64150
Locus tag
AT1G64150
See related
Araport:AT1G64150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22C12.9; F22C12_9
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (23808835..23812725, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor Neighboring gene ncRNA Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene cation/H+ exchanger 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Putative Chloroplast-Localized Ca(2+)/H(+) Antiporter CCHA1 Is Involved in Calcium and pH Homeostasis and Required for PSII Function in Arabidopsis. Wang C, et al. Mol Plant, 2016 Aug 1. PMID 27302341
  2. The Evolutionarily Conserved Protein PHOTOSYNTHESIS AFFECTED MUTANT71 Is Required for Efficient Manganese Uptake at the Thylakoid Membrane in Arabidopsis. Schneider A, et al. Plant Cell, 2016 Apr. PMID 27020959, Free PMC Article
  3. Chloroplast-localized BICAT proteins shape stromal calcium signals and are required for efficient photosynthesis. Frank J, et al. New Phytol, 2019 Jan. PMID 30169890
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105088.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion transmembrane transporter activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables magnesium ion transmembrane transporter activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables magnesium ion transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables manganese ion transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within calcium ion transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in calcium-mediated signaling IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within manganese ion transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within photosystem II oxygen evolving complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Uncharacterized protein family (UPF0016)
NP_564825.1
  • Uncharacterized protein family (UPF0016); LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT4G13590.1); Has 1632 Blast hits to 1475 proteins in 546 species: Archae - 26; Bacteria - 846; Metazoa - 163; Fungi - 173; Plants - 204; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23808835..23812725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105088.4 → NP_564825.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564825.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94AX5, Q9SH65
    UniProtKB/TrEMBL
    A0A178WB27, A0A654EWI4
    Conserved Domains (1) summary
    COG2119
    Location:159 → 370
    Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94AX5.2

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