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DUF4228 domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842778, updated on 18-Sep-2024

Summary

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Official Full Name
DUF4228 domain protein
Primary source
TAIR:AT1G64700
Locus tag
AT1G64700
See related
Araport:AT1G64700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13O11.2; F13O11_2
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (24039706..24040636, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene beta-carotene isomerase D27 Neighboring gene branchless trichome Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Patterns of Sequence and Expression Diversification Associate Members of the PADRE Gene Family With Response to Fungal Pathogens. Didelon M, et al. Front Genet, 2020. PMID 32547597, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105145.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DUF4228 domain protein
NP_176651.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24039706..24040636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105145.4 → NP_176651.1  DUF4228 domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176651.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WTD1, A0A654ELE4, Q9XIS1
    Conserved Domains (1) summary
    pfam14009
    Location:1 → 75
    DUF4228; Domain of unknown function (DUF4228)
Nucleotide Protein
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