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LSM8 Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842881, updated on 18-Sep-2024

Summary

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Official Symbol
LSM8
Official Full Name
Small nuclear ribonucleoprotein family protein
Primary source
TAIR:AT1G65700
Locus tag
AT1G65700
See related
Araport:AT1G65700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtLSM8; F1E22.8; F1E22_8; SM-like 8
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Genomic context

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See LSM8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (24434203..24436456, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene beta expansin 6 Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene serine/arginine repetitive matrix-like protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis. Carrasco-López C, et al. Nucleic Acids Res, 2017 Jul 7. PMID 28482101, Free PMC Article
  2. LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development. Perea-Resa C, et al. Plant Cell, 2012 Dec. PMID 23221597, Free PMC Article
  3. Prefoldins contribute to maintaining the levels of the spliceosome LSM2-8 complex through Hsp90 in Arabidopsis. Esteve-Bruna D, et al. Nucleic Acids Res, 2020 Jun 19. PMID 32396196, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Environment-dependent regulation of spliceosome activity by the LSM8 isoforms in Arabidopsis has been demonstrated.
    Title: Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036161.1
NM_001198394.1
NM_105244.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Small nuclear ribonucleoprotein family protein
NP_001031238.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001185323.1
  • Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649).
NP_176747.1
  • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 967 Blast hits to 967 proteins in 213 species: Archae - 2; Bacteria - 0; Metazoa - 384; Fungi - 316; Plants - 144; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24434203..24436456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198394.1 → NP_001185323.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185323.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IBJ7
    Conserved Domains (1) summary
    cd01727
    Location:7 → 137
    LSm8; Like-Sm protein 8

  2. NM_105244.4 → NP_176747.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176747.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYI0, Q9SHY4
    UniProtKB/TrEMBL
    A0A178W8C1, A0A5S9WQ38
    Conserved Domains (1) summary
    cd01727
    Location:7 → 94
    LSm8; Like-Sm protein 8

  3. NM_001036161.1 → NP_001031238.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031238.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYI0, Q9SHY4
    UniProtKB/TrEMBL
    A0A178W8C1, A0A5S9WQ38
    Conserved Domains (1) summary
    cd01727
    Location:7 → 94
    LSm8; Like-Sm protein 8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYI0.1

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