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PPME1 Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843331, updated on 18-Sep-2024

Summary

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Official Symbol
PPME1
Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT1G69940
Locus tag
AT1G69940
See related
Araport:AT1G69940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPPME1; T17F3.3; T17F3_3
Summary
Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.
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Genomic context

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See PPME1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (26343275..26345058, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase TAU 11 Neighboring gene short hypocotyl in white light1 Neighboring gene pseudo Neighboring gene serine/threonine protein phosphatase 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pollen-specific pectin methylesterase involved in pollen tube growth. Tian GW, et al. Dev Biol, 2006 Jun 1. PMID 16564517
  2. Elaborate spatial patterning of cell-wall PME and PMEI at the pollen tube tip involves PMEI endocytosis, and reflects the distribution of esterified and de-esterified pectins. Röckel N, et al. Plant J, 2008 Jan. PMID 17971035
  3. Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. Louvet R, et al. Planta, 2006 Sep. PMID 16622707
  4. Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae. Bethke G, et al. Plant Physiol, 2014 Feb. PMID 24367018, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_105663.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pectinesterase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pollen tube growth IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus NAS
Non-traceable Author Statement
more info
 PubMed 
located_in endoplasmic reticulum NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in pollen tube IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Pectin lyase-like superfamily protein
NP_177152.2
  • PPME1; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G07410.1); Has 2422 Blast hits to 2374 proteins in 311 species: Archae - 6; Bacteria - 595; Metazoa - 1; Fungi - 194; Plants - 1601; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26343275..26345058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105663.5 → NP_177152.2  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177152.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WM7, Q9CAS7
    UniProtKB/TrEMBL
    A0A5S9WR74, A0A654EPA8
    Conserved Domains (1) summary
    PLN02665
    Location:1 → 361
    PLN02665; pectinesterase family protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WM7.1

Gene LinkOut

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