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F-box family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843396, updated on 18-Sep-2024

Summary

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Official Full Name
F-box family protein
Primary source
TAIR:AT1G70590
Locus tag
AT1G70590
See related
Araport:AT1G70590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24J13.16; F24J13_16
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (26618099..26620421)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alanine-2-oxoglutarate aminotransferase 2 Neighboring gene ncRNA Neighboring gene Ribosomal protein L18e/L15 superfamily protein Neighboring gene transporter associated with antigen processing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105727.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box family protein
NP_564992.1
  • F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26618099..26620421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105727.4 → NP_564992.1  F-box family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564992.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94C27, Q9S730
    UniProtKB/TrEMBL
    A0A5S9WT39
    Conserved Domains (5) summary
    smart00671
    Location:208 → 243
    SEL1; Sel1-like repeats
    COG0790
    Location:93 → 309
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:158 → 185
    SLR; SLR repeat [structural motif]
    pfam00646
    Location:65 → 100
    F-box; F-box domain
    pfam08238
    Location:244 → 279
    Sel1; Sel1 repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94C27.1

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