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Ran BP2/NZF zinc finger-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843402, updated on 18-Sep-2024

Summary

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Official Full Name
Ran BP2/NZF zinc finger-like superfamily protein
Primary source
TAIR:AT1G70650
Locus tag
AT1G70650
See related
Araport:AT1G70650
Gene type
protein coding
RNA name
miRNA
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5A18.17; F5A18_17
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (26638075..26642268)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene octicosapeptide/Phox/Bem1p (PB1) domain-containing protein Neighboring gene microRNA ath-MIR777 precursor Neighboring gene MMS ZWEI homologue 2 Neighboring gene Caleosin-related family protein Neighboring gene Caleosin-related family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • mature miRNA accession:MIMAT0003936
NM_105733.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ran BP2/NZF zinc finger-like superfamily protein
NP_001185364.1
  • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1).
NP_564993.1
  • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1); Has 972 Blast hits to 707 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 88; Plants - 413; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26638075..26642268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198435.1 → NP_001185364.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185364.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WTH1, A0A654ET03, F4I6V2
    Conserved Domains (4) summary
    smart00547
    Location:314 → 337
    ZnF_RBZ; Zinc finger domain
    smart00212
    Location:451 → 586
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    sd00025
    Location:238 → 257
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:279 → 303
    zf-RanBP; Zn-finger in Ran binding protein and others

  2. NM_105733.3 → NP_564993.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564993.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDL0, F4I6V3
    Conserved Domains (3) summary
    smart00547
    Location:314 → 337
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:238 → 257
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:279 → 303
    zf-RanBP; Zn-finger in Ran binding protein and others
Nucleotide Protein
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