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CLO4 Caleosin-related family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843404, updated on 18-Sep-2024

Summary

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Official Symbol
CLO4
Official Full Name
Caleosin-related family protein
Primary source
TAIR:AT1G70670
Locus tag
AT1G70670
See related
Araport:AT1G70670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis thaliana caleosin 4; AtCLO4; caleosin 4; F5A18.15; F5A18_15; peroxygenase 4; PXG4
Summary
The gene encodes a stress-responsive and OB-associated non-seed caleosin-like protein. It plays a negative regulator role in ABA signaling.
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Genomic context

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See CLO4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (26644565..26646200)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ran BP2/NZF zinc finger-like superfamily protein Neighboring gene microRNA ath-MIR777 precursor Neighboring gene MMS ZWEI homologue 2 Neighboring gene Caleosin-related family protein Neighboring gene Receptor-like protein kinase-related family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A non-canonical caleosin from Arabidopsis efficiently epoxidizes physiological unsaturated fatty acids with complete stereoselectivity. Blée E, et al. FEBS J, 2012 Oct. PMID 22913587
  2. A stress-responsive caleosin-like protein, AtCLO4, acts as a negative regulator of ABA responses in Arabidopsis. Kim YY, et al. Plant Cell Physiol, 2011 May. PMID 21471120
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that linoleic and linolenic acids were the preferred substrates for PXG4 (AT1G70670; AtClO4); they are oxidized into the different positional isomers of the monoepoxides and into diepoxides.
    Title: A non-canonical caleosin from Arabidopsis efficiently epoxidizes physiological unsaturated fatty acids with complete stereoselectivity.
  2. The oil-body -associated Ca(2+)-binding AtCLO4 protein acts as a negative regulator of abscissic acid responses in Arabidopsis.[AtCLO4]
    Title: A stress-responsive caleosin-like protein, AtCLO4, acts as a negative regulator of ABA responses in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_105735.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables plant seed peroxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within drought recovery IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Caleosin-related family protein
NP_564995.1
  • Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70680.1); Has 341 Blast hits to 336 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 278; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26644565..26646200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105735.3 → NP_564995.1  Caleosin-related family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564995.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L9R2, Q9CAB7
    UniProtKB/TrEMBL
    A0A178WGM7, A0A5S9WR79, A0A654EMW5
    Conserved Domains (1) summary
    pfam05042
    Location:19 → 182
    Caleosin; Caleosin related protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAB7.1

Gene LinkOut

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