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tRNA synthetase beta subunit family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843587, updated on 18-Sep-2024

Summary

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Official Full Name
tRNA synthetase beta subunit family protein
Primary source
TAIR:AT1G72550
Locus tag
AT1G72550
See related
Araport:AT1G72550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28P22.26; F28P22_26
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Sequence:
Chromosome: 1; NC_003070.9 (27319688..27324112, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plastid developmental protein DAG Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_105914.5
NM_179548.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables phenylalanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
tRNA synthetase beta subunit family protein
NP_177399.1
  • tRNA synthetase beta subunit family protein; FUNCTIONS IN: phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 6477 Blast hits to 6464 proteins in 2647 species: Archae - 257; Bacteria - 4445; Metazoa - 257; Fungi - 153; Plants - 56; Viruses - 0; Other Eukaryotes - 1309 (source: NCBI BLink).
NP_849879.1
  • tRNA synthetase beta subunit family protein; FUNCTIONS IN: RNA binding, phenylalanine-tRNA ligase activity, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 5993 Blast hits to 5980 proteins in 2451 species: Archae - 257; Bacteria - 4083; Metazoa - 257; Fungi - 153; Plants - 58; Viruses - 0; Other Eukaryotes - 1185 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27319688..27324112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105914.5 → NP_177399.1  tRNA synthetase beta subunit family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177399.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SGE9
    UniProtKB/TrEMBL
    A0A178WJL7, A0A5S9WTH7, A0A7G2E5C5
    Conserved Domains (1) summary
    PLN02265
    Location:1 → 598
    PLN02265; probable phenylalanyl-tRNA synthetase beta chain

  2. NM_179548.1 → NP_849879.1  tRNA synthetase beta subunit family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849879.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E5C5, F4IDD6
    Conserved Domains (4) summary
    smart00873
    Location:119 → 280
    B3_4; B3/4 domain
    PLN02265
    Location:1 → 584
    PLN02265; probable phenylalanyl-tRNA synthetase beta chain
    cd00769
    Location:394 → 576
    PheRS_beta_core; Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an ...
    pfam03484
    Location:311 → 378
    B5; tRNA synthetase B5 domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SGE9.1

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