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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843592, updated on 18-Sep-2024

Summary

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Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT1G72600
Locus tag
AT1G72600
See related
Araport:AT1G72600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28P22.21; F28P22_21
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (27338034..27340328)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene ncRNA Neighboring gene germin-like protein 1 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ELF4-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001198455.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_001185384.1
  • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G54215.1).
NP_177404.1
  • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G54215.1); Has 641 Blast hits to 614 proteins in 80 species: Archae - 2; Bacteria - 10; Metazoa - 113; Fungi - 43; Plants - 427; Viruses - 2; Other Eukaryotes - 44 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27338034..27340328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105919.5 → NP_177404.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177404.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WTT0, A0A654ENQ3, Q9CAH6

  2. NM_001198455.1 → NP_001185384.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185384.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WTT0, A0A654ENQ3, Q9CAH6
Nucleotide Protein
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