U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAD1 cinnamyl-alcohol dehydrogenase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843600, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
CAD1
Official Full Name
cinnamyl-alcohol dehydrogenase
Primary source
TAIR:AT1G72680
Locus tag
AT1G72680
See related
Araport:AT1G72680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCAD1; CINNAMYL ALCOHOL DEHYDROGENASE 1; cinnamyl-alcohol dehydrogenase; F28P22.13; F28P22_13
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CAD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (27359109..27361024, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRF-like 6 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene IQ-domain 8 Neighboring gene neurofilament heavy protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular cloning, sequence analysis and elicitor-/ozone-induced accumulation of cinnamyl alcohol dehydrogenase from Norway spruce (Picea abies L.). Galliano H, et al. Plant Mol Biol, 1993 Oct. PMID 8219046
  2. Expression of cinnamyl alcohol dehydrogenases and their putative homologues during Arabidopsis thaliana growth and development: lessons for database annotations? Kim SJ, et al. Phytochemistry, 2007 Jul. PMID 17467016
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_105927.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cinnamyl-alcohol dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lignin biosynthetic process IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within lignin biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cinnamyl-alcohol dehydrogenase
NP_177412.1
  • cinnamyl-alcohol dehydrogenase (CAD1); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, zinc ion binding, cofactor binding; INVOLVED IN: lignin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 3 (TAIR:AT2G21890.1); Has 36986 Blast hits to 36967 proteins in 3073 species: Archae - 711; Bacteria - 24167; Metazoa - 1364; Fungi - 2774; Plants - 3348; Viruses - 3; Other Eukaryotes - 4619 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27359109..27361024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105927.4 → NP_177412.1  cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177412.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAI3
    UniProtKB/TrEMBL
    A0A178WLT3, A0A5S9WTU0
    Conserved Domains (1) summary
    cd05283
    Location:12 → 349
    CAD1; Cinnamyl alcohol dehydrogenases (CAD)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAI3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools