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Transmembrane Fragile-X-F-associated protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843732, updated on 18-Sep-2024

Summary

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Official Full Name
Transmembrane Fragile-X-F-associated protein
Primary source
TAIR:AT1G73950
Locus tag
AT1G73950
See related
Araport:AT1G73950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2P9.18; F2P9_18
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (27799696..27804687, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene polarity axis stabilization protein Neighboring gene tumor necrosis factor receptor family protein Neighboring gene TBP-associated factor 2 Neighboring gene CLAVATA3/ESR-RELATED 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334614.1
NM_106054.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
Transmembrane Fragile-X-F-associated protein
NP_177535.2
  • Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G18470.1); Has 2761 Blast hits to 2652 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 1645; Fungi - 8; Plants - 510; Viruses - 253; Other Eukaryotes - 345 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27799696..27804687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106054.4 → NP_177535.2  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177535.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WU71, F4HS21
    Conserved Domains (2) summary
    pfam10269
    Location:28 → 291
    Tmemb_185A; Transmembrane Fragile-X-F protein
    pfam13920
    Location:415 → 460
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_001334614.1 → NP_001322804.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AV52, A0A5S9WU71
Nucleotide Protein
Heading Accession and Version

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