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AT1G78760 F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844212, updated on 15-Feb-2024

Summary

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Gene symbol
AT1G78760
Gene description
F-box/RNI-like superfamily protein
Primary source
Araport:AT1G78760
Locus tag
AT1G78760
See related
TAIR:AT1G78760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9K20.20; F9K20_20
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Genomic context

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See AT1G78760 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (29615096..29616738, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene anaphase promoting complex 6 Neighboring gene pathogenesis-related family protein Neighboring gene centromere protein X

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box/RNI-like superfamily protein
NP_177997.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1); Has 2221 Blast hits to 2170 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2218; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29615096..29616738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106523.2 → NP_177997.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177997.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV94
    UniProtKB/TrEMBL
    A0A178W3Q2, A0A5S9WVJ2
    Conserved Domains (3) summary
    smart00579
    Location:371 → 442
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:145 → 165
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:16 → 56
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZV94.1

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