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AT1G78790 centromere protein X [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844215, updated on 7-Sep-2023

Summary

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Gene symbol
AT1G78790
Gene description
centromere protein X
Primary source
Araport:AT1G78790
Locus tag
AT1G78790
See related
TAIR:AT1G78790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMHF2; F9K20.17; F9K20_17; MHF2
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Genomic context

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See AT1G78790 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (29623205..29625078, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene anaphase promoting complex 6 Neighboring gene pathogenesis-related family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossovers. Girard C, et al. Nucleic Acids Res, 2014 Aug. PMID 25038251, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MHF2 limits crossover formation at meiosis.
    Title: FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossovers.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084374.1
NM_001334846.1
NM_001334847.1
NM_106526.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within homologous chromosome pairing at meiosis IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in kinetochore assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
centromere protein X
NP_001077843.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_178000.2
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29623205..29625078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106526.4 → NP_178000.2  centromere protein X [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178000.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7N3, Q9ZV97
    UniProtKB/TrEMBL
    A0A178WHI0
    Conserved Domains (1) summary
    pfam09415
    Location:54 → 103
    CENP-X; CENP-S associating Centromere protein X

  2. NM_001334846.1 → NP_001323103.1  centromere protein X [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7N3, Q9ZV97
    UniProtKB/TrEMBL
    A0A178WHI0
    Conserved Domains (1) summary
    pfam09415
    Location:54 → 103
    CENP-X; CENP-S associating Centromere protein X

  3. NM_001334847.1 → NP_001323102.1  centromere protein X [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7N3, Q9ZV97
    UniProtKB/TrEMBL
    A0A178WHI0
    Conserved Domains (1) summary
    pfam09415
    Location:54 → 103
    CENP-X; CENP-S associating Centromere protein X

  4. NM_001084374.1 → NP_001077843.1  centromere protein X [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077843.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IBV2
    Conserved Domains (1) summary
    pfam09415
    Location:21 → 85
    CENP-X; CENP-S associating Centromere protein X
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7N3.1

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