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F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844221, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/RNI-like/FBD-like domains-containing protein
Primary source
TAIR:AT1G78840
Locus tag
AT1G78840
See related
Araport:AT1G78840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9K20.11; F9K20_11
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (29639290..29641018, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein Neighboring gene Curculin-like (mannose-binding) lectin family protein Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box/RNI-like/FBD-like domains-containing protein
NP_001319408.1
  • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22670.1); Has 1766 Blast hits to 1735 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29639290..29641018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334849.1 → NP_001319408.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVA3
    UniProtKB/TrEMBL
    A0A5S9WVK2, A0A654ERT7
    Conserved Domains (4) summary
    smart00256
    Location:11 → 44
    FBOX; A Receptor for Ubiquitination Targets
    smart00579
    Location:358 → 435
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:129 → 149
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:149 → 174
    LRR_2; Leucine Rich Repeat

  2. NM_106532.1 → NP_178005.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178005.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVA3
    UniProtKB/TrEMBL
    A0A5S9WVK2, A0A654ERT7
    Conserved Domains (4) summary
    smart00256
    Location:11 → 44
    FBOX; A Receptor for Ubiquitination Targets
    smart00579
    Location:358 → 435
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:129 → 149
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:149 → 174
    LRR_2; Leucine Rich Repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVA3.1

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