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Mitochondrial transcription termination factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844232, updated on 18-Sep-2024

Summary

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Official Full Name
Mitochondrial transcription termination factor family protein
Primary source
TAIR:AT1G78930
Locus tag
AT1G78930
See related
Araport:AT1G78930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
YUP8H12R.46; YUP8H12R_46
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (29677904..29680757, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene vacuolar H+-pyrophosphatase 2 Neighboring gene uncharacterized protein Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene Terpenoid cyclases family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Babiychuk E, et al. Proc Natl Acad Sci U S A, 2011 Apr 19. PMID 21464319, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_106542.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Mitochondrial transcription termination factor family protein
NP_178014.2
  • Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1485 Blast hits to 916 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 0; Plants - 1282; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29677904..29680757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106542.4 → NP_178014.2  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178014.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WHR1, A0A5S9WVM1, Q0WRV2
    Conserved Domains (2) summary
    smart00733
    Location:248 → 277
    Mterf; Mitochondrial termination factor repeats
    pfam02536
    Location:268 → 575
    mTERF
Nucleotide Protein
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