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SRF5 STRUBBELIG-receptor family 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844238, updated on 18-Sep-2024

Summary

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Official Symbol
SRF5
Official Full Name
STRUBBELIG-receptor family 5
Primary source
TAIR:AT1G78980
Locus tag
AT1G78980
See related
Araport:AT1G78980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
STRUBBELIG-receptor family 5; YUP8H12R.40; YUP8H12R_40
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Genomic context

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See SRF5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (29707625..29711421, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene camelliol C synthase 1 Neighboring gene lupeol synthase 2 Neighboring gene lupeol synthase 1 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_106547.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
STRUBBELIG-receptor family 5
NP_178019.2
  • STRUBBELIG-receptor family 5 (SRF5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 4 (TAIR:AT3G13065.1); Has 170876 Blast hits to 124647 proteins in 4182 species: Archae - 145; Bacteria - 15263; Metazoa - 50770; Fungi - 9097; Plants - 76380; Viruses - 385; Other Eukaryotes - 18836 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29707625..29711421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106547.3 → NP_178019.2  STRUBBELIG-receptor family 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178019.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64550, Q6R2K1
    UniProtKB/TrEMBL
    A0A5S9WVQ3, A0A654ERV3, C0LGJ3
    Conserved Domains (4) summary
    PLN00113
    Location:73 → 680
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:70 → 93
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:25 → 65
    LRRNT_2; Leucine rich repeat N-terminal domain
    cl21453
    Location:410 → 675
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6R2K1.1

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