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Alpha-helical ferredoxin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844242, updated on 18-Sep-2024

Summary

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Official Full Name
Alpha-helical ferredoxin
Primary source
TAIR:AT1G79010
Locus tag
AT1G79010
See related
Araport:AT1G79010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
YUP8H12R.37; YUP8H12R_37
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (29724796..29727028, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene histone acetyltransferase of the CBP family 1 Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene Chaperone DnaJ-domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Photoperiod Affects the Phenotype of Mitochondrial Complex I Mutants. Pétriacq P, et al. Plant Physiol, 2017 Jan. PMID 27852950, Free PMC Article
  2. Proteomic identification of divalent metal cation binding proteins in plant mitochondria. Herald VL, et al. FEBS Lett, 2003 Feb 27. PMID 12606038
  3. Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits. Heazlewood JL, et al. Biochim Biophys Acta, 2003 Jul 10. PMID 12837548
  4. Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Klodmann J, et al. Plant Cell, 2010 Mar. PMID 20197505, Free PMC Article
  5. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At1g79010 role in Arabidopsis response to different photoperiod
    Title: Photoperiod Affects the Phenotype of Mitochondrial Complex I Mutants.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_106551.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables NADH dehydrogenase (ubiquinone) activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
part_of respiratory chain complex I HDA PubMed 
part_of respiratory chain complex I IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Alpha-helical ferredoxin
NP_178022.1
  • Alpha-helical ferredoxin; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 4Fe-4S binding domain (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: Alpha-helical ferredoxin (TAIR:AT1G16700.1); Has 11535 Blast hits to 10912 proteins in 2421 species: Archae - 1438; Bacteria - 6995; Metazoa - 154; Fungi - 106; Plants - 790; Viruses - 1; Other Eukaryotes - 2051 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29724796..29727028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106551.4 → NP_178022.1  Alpha-helical ferredoxin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178022.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWI2, Q42599
    UniProtKB/TrEMBL
    A0A5S9WVN1, A0A654EVE1
    Conserved Domains (1) summary
    PRK05888
    Location:64 → 222
    PRK05888; NADH-quinone oxidoreductase subunit NuoI
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q42599.1

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