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PGK [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844293, updated on 22-Aug-2024

Summary

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Official Symbol
PGK
Primary source
Araport:AT1G79550
Locus tag
AT1G79550
See related
TAIR:AT1G79550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
phosphoglycerate kinase; PHOSPHOGLYCERATE KINASE; T8K14.3; T8K14_3
Summary
Encodes cytosolic phosphoglycerate kinase (PGK).
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Genomic context

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See PGK in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (29924023..29926636, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene FTSH protease 12 Neighboring gene ncRNA Neighboring gene kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The link between transcript regulation and de novo protein synthesis in the retrograde high light acclimation response of Arabidopsis thaliana. Oelze ML, et al. BMC Genomics, 2014 Apr 30. PMID 24884362, Free PMC Article
  2. A proteomic analysis of Arabidopsis thaliana seedling responses to 3-oxo-octanoyl-homoserine lactone, a bacterial quorum-sensing signal. Miao C, et al. Biochem Biophys Res Commun, 2012 Oct 19. PMID 22995300
  3. Core genome responses involved in acclimation to high temperature. Larkindale J, et al. Plant Physiol, 2008 Feb. PMID 18055584, Free PMC Article
  4. Extracellular ATP functions as an endogenous external metabolite regulating plant cell viability. Chivasa S, et al. Plant Cell, 2005 Nov. PMID 16199612, Free PMC Article
  5. Two phosphoglycerate kinase cDNAs from Arabidopsis thaliana. Löbler M. DNA Seq, 1998 Mar. PMID 10520454

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PGK3 (At1g79550) is a the cytosolic glycolytic enzyme involved in the metabolism and plant growth.
    Title: Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106603.3
NM_179576.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphoglycerate kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glycolytic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to glucose IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to molecule of bacterial origin IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in apoplast HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol NAS
Non-traceable Author Statement
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
phosphoglycerate kinase
NP_178073.1
  • phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink).
NP_849907.1
  • phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29924023..29926636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179576.3 → NP_849907.1  phosphoglycerate kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z3A6, Q56ZW1, Q8LFV7, Q9SAJ4
    UniProtKB/TrEMBL
    A0A178WHC3, A0A5S9WVT0
    Conserved Domains (1) summary
    PLN02282
    Location:1 → 401
    PLN02282; phosphoglycerate kinase

  2. NM_106603.3 → NP_178073.1  phosphoglycerate kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z3A6, Q56ZW1, Q8LFV7, Q9SAJ4
    UniProtKB/TrEMBL
    A0A178WHC3, A0A5S9WVT0
    Conserved Domains (1) summary
    PLN02282
    Location:1 → 401
    PLN02282; phosphoglycerate kinase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAJ4.1

Gene LinkOut

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