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ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 84837, updated on 10-Oct-2023

Summary

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Official Symbol
ARHGAP5-AS1provided by HGNC
Official Full Name
ARHGAP5 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:20279
See related
AllianceGenome:HGNC:20279
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf128
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Genomic context

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See ARHGAP5-AS1 in Genome Data Viewer
Location:
14q12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (32075419..32076699, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (26273042..26274322, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (32544625..32545905, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ZFAND2A pseudogene 2 Neighboring gene MPRA-validated peak2133 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:32489479-32490678 Neighboring gene uncharacterized LOC105370440 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5657 Neighboring gene Sharpr-MPRA regulatory region 9862 Neighboring gene Rho GTPase activating protein 5 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:32596327-32597277 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8238 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8239 Neighboring gene RNA, U6 small nuclear 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. N(6) -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma. Liu J, et al. Clin Transl Med, 2022 Nov. PMID 36354136, Free PMC Article
  2. Long non-coding RNA ARHGAP5-AS1 inhibits migration of breast cancer cell via stabilizing SMAD7 protein. Wang CL, et al. Breast Cancer Res Treat, 2021 Oct. PMID 34370213, Free PMC Article
  3. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N(6) -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma.
    Title: N(6) -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma.
  2. Long non-coding RNA ARHGAP5-AS1 inhibits migration of breast cancer cell via stabilizing SMAD7 protein.
    Title: Long non-coding RNA ARHGAP5-AS1 inhibits migration of breast cancer cell via stabilizing SMAD7 protein.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ARHGAP5 antisense RNA 1 (non-protein coding)

Clone Names

  • MGC15504

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI493138, BC007251, BM745256

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    32075419..32076699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    26273042..26274322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032751.1: Suppressed sequence

    Description
    NM_032751.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96IT6.1 GenPept UniProtKB/Swiss-Prot:Q96IT6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous