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POM34 Pom34p [ Saccharomyces cerevisiae S288C ]

Gene ID: 850705, updated on 2-Nov-2024

Summary

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Official Symbol
POM34
Official Full Name
Pom34p
Primary source
SGD:S000004008
Locus tag
YLR018C
See related
AllianceGenome:SGD:S000004008; FungiDB:YLR018C; VEuPathDB:YLR018C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to be a structural constituent of nuclear pore. Involved in nuclear pore organization; protein import into nucleus; and spindle pole body duplication. Located in nuclear outer membrane. Part of nuclear pore transmembrane ring. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See POM34 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (178707..179606, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene Pml1p Neighboring gene S-methyl-5-thioadenosine phosphorylase Neighboring gene putative phosphatase Neighboring gene sterol esterase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reduction of Saccharomyces cerevisiae Pom34 protein level by SESA network is related to membrane lipid composition. Sezen B. FEMS Yeast Res, 2015 Dec. PMID 26419396
  2. The SUN protein Mps3 controls Ndc1 distribution and function on the nuclear membrane. Chen J, et al. J Cell Biol, 2014 Feb 17. PMID 24515347, Free PMC Article
  3. Distinct domains in Ndc1 mediate its interaction with the Nup84 complex and the nuclear membrane. Amm I, et al. J Cell Biol, 2023 Jun 5. PMID 37154843, Free PMC Article
  4. Integrity and function of the Saccharomyces cerevisiae spindle pole body depends on connections between the membrane proteins Ndc1, Rtn1, and Yop1. Casey AK, et al. Genetics, 2012 Oct. PMID 22798490, Free PMC Article
  5. The role of the integral membrane nucleoporins Ndc1p and Pom152p in nuclear pore complex assembly and function. Madrid AS, et al. J Cell Biol, 2006 May 8. PMID 16682526, Free PMC Article

See all (74) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables structural constituent of nuclear pore IC
Inferred by Curator
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA transport IEA
Inferred from Electronic Annotation
more info
  
involved_in nuclear pore organization IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in nucleocytoplasmic transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein import into nucleus IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in spindle pole body duplication IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spindle pole body duplication IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in nuclear outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nuclear outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear periphery HDA PubMed 
part_of nuclear pore IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
  
part_of nuclear pore transmembrane ring IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nuclear pore transmembrane ring IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore transmembrane ring IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Pom34p
NP_013118.1
  • Subunit of the transmembrane ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis and spindle pole body duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    178707..179606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181905.1 → NP_013118.1  TPA: Pom34p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013118.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VY20, E9P8U3, Q12445, Q7LGY6
    UniProtKB/TrEMBL
    A7A0S3, B3LSZ1, C7GXG4, C8ZCZ0
    Conserved Domains (1) summary
    pfam08058
    Location:40 → 188
    NPCC; Nuclear pore complex component
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q12445.1

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