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DUS3 tRNA dihydrouridine synthase DUS3 [ Saccharomyces cerevisiae S288C ]

Gene ID: 851117, updated on 29-Jun-2024

Summary

Gene symbol
DUS3
Gene description
tRNA dihydrouridine synthase DUS3
Primary source
FungiDB:YLR401C
Locus tag
YLR401C
See related
SGD:S000004393; AllianceGenome:SGD:S000004393; VEuPathDB:YLR401C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables tRNA dihydrouridine synthase activity. Involved in tRNA modification. Located in nuclear periphery. Orthologous to human DUS3L (dihydrouridine synthase 3 like). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See DUS3 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (922442..924448, complement)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene SKI complex RNA helicase subunit SKI2 Neighboring gene chromatin-binding protein BDF1 Neighboring gene zinc-coordinating transcription factor SFP1 Neighboring gene seipin

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding HDA PubMed 
enables mRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables tRNA dihydrouridine synthase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables tRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 
enables tRNA dihydrouridine synthase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables tRNA-dihydrouridine47 synthase activity IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in tRNA dihydrouridine synthesis IEA
Inferred from Electronic Annotation
more info
 
involved_in tRNA modification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear periphery IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus HDA PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tRNA dihydrouridine synthase DUS3
NP_013505.4
  • Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; modifies pre-tRNAs at U47 of the variable arm; contains a consensus oleate response element (ORE) in its promoter region; forms nuclear foci upon DNA replication stress

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    922442..924448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182289.3NP_013505.4  TPA: tRNA dihydrouridine synthase DUS3 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013505.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A7A1S5, D6VZ35, P39519, Q06053
    UniProtKB/TrEMBL
    A0A6A5PVU2, B5VNT6, C7GXK4, G2WJL5, N1P064
    Conserved Domains (2) summary
    COG0042
    Location:284597
    DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
    pfam18044
    Location:96120
    zf-CCCH_4; CCCH-type zinc finger