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[ Saccharomyces cerevisiae S288C ]

Gene ID: 851538, updated on 2-Nov-2024

Summary

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Primary source
SGD:S000006510
Locus tag
YNCD0004W
See related
AllianceGenome:SGD:S000006510
Gene type
tRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translational elongation. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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Location:
chromosome: IV
Sequence:
Chromosome: IV; NC_001136.10 (410379..410451)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene putative serine/threonine protein kinase RTK1 Neighboring gene putative acid phosphatase DIA3 Neighboring gene uncharacterized protein Neighboring gene glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 Neighboring gene phosphoglycerate mutase family protein GPM2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. tRNA genes and retroelements in the yeast genome. Hani J, et al. Nucleic Acids Res, 1998 Feb 1. PMID 9443958, Free PMC Article
  2. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. Percudani R, et al. J Mol Biol, 1997 May 2. PMID 9159473
  3. A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes. Kumar Y, et al. BMC Genomics, 2013 Jun 17. PMID 23767421, Free PMC Article
  4. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res, 1997 Mar 1. PMID 9023104, Free PMC Article
  5. Proteasome inhibition prevents cell death induced by the chemotherapeutic agent cisplatin downstream of DNA damage. Costa AR, et al. DNA Repair (Amst), 2019 Jan. PMID 30502926

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • Alanine tRNA (tRNA-Ala), predicted by tRNAscan-SE analysis; one of 11 nuclear tRNA genes containing the tDNA-anticodon AGC (converted to IGC in the mature tRNA), decodes GCU and GCC codons into alanine, one of 16 nuclear tRNAs for alanine

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triplet codon-amino acid adaptor activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
involved_in translational elongation IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IC
Inferred by Curator
more info
 PubMed 

Gene LinkOut

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