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YJR056C uncharacterized protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 853518, updated on 29-Jun-2024

Summary

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Gene symbol
YJR056C
Gene description
uncharacterized protein
Primary source
FungiDB:YJR056C
Locus tag
YJR056C
See related
SGD:S000003817; AllianceGenome:SGD:S000003817; VEuPathDB:YJR056C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See YJR056C in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Sequence:
Chromosome: X; NC_001142.9 (541792..542502, complement)

Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Hit1p Neighboring gene tRNA-Asp Neighboring gene tRNA-Tyr Neighboring gene bifunctional thymidylate/uridylate kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001142.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Milligan L, et al. Mol Cell Biol, 2008 Sep. PMID 18591258, Free PMC Article
  2. Genome-Wide Studies of Rho5-Interacting Proteins That Are Involved in Oxidant-Induced Cell Death in Budding Yeast. Singh K, et al. G3 (Bethesda), 2019 Mar 7. PMID 30670610, Free PMC Article
  3. Whi3, an S. cerevisiae RNA-binding protein, is a component of stress granules that regulates levels of its target mRNAs. Holmes KJ, et al. PLoS One, 2013. PMID 24386330, Free PMC Article
  4. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Tong AH, et al. Science, 2002 Jan 11. PMID 11743162
  5. The S. cerevisiae m6A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts. Scutenaire J, et al. Nucleic Acids Res, 2023 Jan 25. PMID 35934316, Free PMC Article

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_012590.3
  • hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; relative distribution to the nucleus increases upon DNA replication stress

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001142.9 Reference assembly

    Range
    541792..542502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181714.3 → NP_012590.3  TPA: uncharacterized protein YJR056C [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_012590.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VWM7, P47115
    UniProtKB/TrEMBL
    A0A7I9FKW1, A6ZQ15, B3LQE5, C7GME7, G2WH61, N1P138
    Conserved Domains (1) summary
    pfam15251
    Location:27 → 212
    DUF4588; Domain of unknown function (DUF4588)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P47115.1

Gene LinkOut

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