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RPL13B ribosomal 60S subunit protein L13B [ Saccharomyces cerevisiae S288C ]

Gene ID: 855173, updated on 2-Nov-2024

Summary

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Official Symbol
RPL13B
Official Full Name
ribosomal 60S subunit protein L13B
Primary source
SGD:S000004750
Locus tag
YMR142C
See related
AllianceGenome:SGD:S000004750; FungiDB:YMR142C; VEuPathDB:YMR142C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in macroautophagy. Part of cytosolic large ribosomal subunit. Orthologous to human RPL13 (ribosomal protein L13). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See RPL13B in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
2
Sequence:
Chromosome: XIII; NC_001145.3 (550206..551207, complement)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Sip5p Neighboring gene uncharacterized protein Neighboring gene ribosomal 40S subunit protein S16A Neighboring gene Fdo1p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Presence of Not5 and ubiquitinated Rps7A in polysome fractions depends upon the Not4 E3 ligase. Panasenko OO, et al. Mol Microbiol, 2012 Feb. PMID 22243599
  2. Inorganic phosphate deprivation causes tRNA nuclear accumulation via retrograde transport in Saccharomyces cerevisiae. Hurto RL, et al. Genetics, 2007 Jun. PMID 17409072, Free PMC Article
  3. Ribosomal proteins produced in excess are degraded by the ubiquitin-proteasome system. Sung MK, et al. Mol Biol Cell, 2016 Sep 1. PMID 27385339, Free PMC Article
  4. Expression of proteins with dimethylarginines in Escherichia coli for protein-protein interaction studies. Hsieh CH, et al. Protein Sci, 2007 May. PMID 17456744, Free PMC Article
  5. Mutator genes for suppression of gross chromosomal rearrangements identified by a genome-wide screening in Saccharomyces cerevisiae. Smith S, et al. Proc Natl Acad Sci U S A, 2004 Jun 15. PMID 15184655, Free PMC Article

See all (110) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IC
Inferred by Curator
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation IC
Inferred by Curator
more info
 PubMed 
involved_in macroautophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal 60S subunit protein L13B
NP_013862.1
  • Ribosomal 60S subunit protein L13B; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13B has a paralog, RPL13A, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    550206..551207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182644.1 → NP_013862.1  TPA: ribosomal 60S subunit protein L13B [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013862.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VZW4, P40212
    UniProtKB/TrEMBL
    A6ZMK1, B3LM30, C8ZEZ8, G2WKJ3
    Conserved Domains (1) summary
    pfam01294
    Location:8 → 175
    Ribosomal_L13e; Ribosomal protein L13e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P40212.1

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