U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LIN1 U5 snRNP complex subunit LIN1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 856561, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
LIN1
Gene description
U5 snRNP complex subunit LIN1
Primary source
FungiDB:YHR156C
Locus tag
YHR156C
See related
SGD:S000001199; AllianceGenome:SGD:S000001199; VEuPathDB:YHR156C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
SNU40
Summary
Located in chromatin and nucleus. Part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LIN1 in Genome Data Viewer
Location:
chromosome: VIII
Exon count:
1
Sequence:
Chromosome: VIII; NC_001140.6 (411384..412406, complement)

Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene Lam1p Neighboring gene ncRNA Neighboring gene Rec104p Neighboring gene Kel1p

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_001140.6

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Incorporating functional inter-relationships into protein function prediction algorithms. Pandey G, et al. BMC Bioinformatics, 2009 May 12. PMID 19435516, Free PMC Article
  2. Proteins interacting with Lin 1p, a putative link between chromosome segregation, mRNA splicing and DNA replication in Saccharomyces cerevisiae. Bialkowska A, et al. Yeast, 2002 Nov. PMID 12402242
  3. Bayesian Markov Random Field analysis for protein function prediction based on network data. Kourmpetis YA, et al. PLoS One, 2010 Feb 24. PMID 20195360, Free PMC Article
  4. Localization of Prp8, Brr2, Snu114 and U4/U6 proteins in the yeast tri-snRNP by electron microscopy. Häcker I, et al. Nat Struct Mol Biol, 2008 Nov. PMID 18953335
  5. Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. Stevens SW, et al. RNA, 2001 Nov. PMID 11720284, Free PMC Article

See all (41) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of U5 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U5 snRNP IDA
Inferred from Direct Assay
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
U5 snRNP complex subunit LIN1
NP_012026.1
  • Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001140.6 Reference assembly

    Range
    411384..412406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001179287.1 → NP_012026.1  TPA: U5 snRNP complex subunit LIN1 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_012026.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D3DLA5, P38852
    UniProtKB/TrEMBL
    A0A8H4BZX4, A6ZT64, B5VK85, C7GJY2, C8Z9V3, N1P9G9
    Conserved Domains (1) summary
    smart00444
    Location:283 → 340
    GYF; Contains conserved Gly-Tyr-Phe residues
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P38852.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools