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[ Saccharomyces cerevisiae S288C ]

Gene ID: 856706, updated on 28-Oct-2024

Summary

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Primary source
SGD:S000006618
Locus tag
YNCE0009C
See related
AllianceGenome:SGD:S000006618
Gene type
tRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables triplet codon-amino acid adaptor activity. Involved in mitochondrial translation. Located in cytosol and mitochondrion. [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

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Location:
chromosome: V
Sequence:
Chromosome: V; NC_001137.3 (135425..135497, complement)

Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene E2 ubiquitin-conjugating protein UBC8 Neighboring gene 1,4-alpha-glucan branching enzyme Neighboring gene uncharacterized protein Neighboring gene tRNA-Arg

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001137.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mechanisms of tRNA import into yeast mitochondria: an overview. Tarassov IA, et al. Biochimie, 1996. PMID 8915539
  2. Import of nuclear deoxyribonucleic acid coded lysine-accepting transfer ribonucleic acid (anticodon C-U-U) into yeast mitochondria. Martin RP, et al. Biochemistry, 1979 Oct 16. PMID 387075
  3. Evidence for an adaptation mechanism of mitochondrial translation via tRNA import from the cytosol. Kamenski P, et al. Mol Cell, 2007 Jun 8. PMID 17560369
  4. Thio-Modification of tRNA at the Wobble Position as Regulator of the Kinetics of Decoding and Translocation on the Ribosome. Ranjan N, et al. J Am Chem Soc, 2017 Apr 26. PMID 28368583
  5. tRNA genes and retroelements in the yeast genome. Hani J, et al. Nucleic Acids Res, 1998 Feb 1. PMID 9443958, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • Lysine tRNA (tRNA-Lys), predicted by tRNAscan-SE analysis; a small portion is imported into mitochondria via interaction with mt lysyl-tRNA synthetase Msk1p and is necessary to decode AAG codons at high temperature, when base modification of mt-encoded tRNA-Lys is reduced

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triplet codon-amino acid adaptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables triplet codon-amino acid adaptor activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
involved_in translational elongation IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

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